Multi-state Markov models in continuous time


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Accompanying documentation is available in the subdirectory "doc" of the installed package.

aneur Aortic aneurysm progression data
coef.msm Extract model coefficients
crudeinits.msm Calculate crude initial values for transition intensities
deltamethod The delta method
ematrix.msm Misclassification probability matrix
expit Inverse logit function
hazard.msm Calculate tables of hazard ratios for covariates on transition intensities
heart Heart transplant monitoring data
logit Logit function
MatrixExp Matrix exponential
msm Multi-state Markov models
odds.msm Calculate tables of odds ratios for covariates on misclassification probabilities
plot.msm Plots of multi-state models
pmatrix.msm Transition probability matrix
pmatrix.piecewise.msm Transition probability matrix for processes with piecewise-constant intensities
prevalence.msm Tables of observed and expected prevalences
print.msm Print a fitted multi-state model
print.summary.msm Summarise a fitted multi-state model
qmatrix.msm Transition intensity matrix
qratio.msm Estimated ratio of transition intensities
sim.msm Simulate one individual trajectory from a continuous-time Markov model
simmulti.msm Simulate multiple trajectories from a multi-state Markov model with arbitrary observation times
sojourn.msm Mean sojourn times from a multi-state model
statetable.msm Table of transitions
summary.msm Summarise a fitted multi-state model
totlos.msm Total length of stay
viterbi.msm Calculate the most likely path through underlying stages