msm-internal {msm}R Documentation

Internal msm functions

Description

Auxiliary R functions used in the msm package. These are not meant to be called by the user

Usage


lik.msm(params, allinits, misc, subject, time, state, tostate, fromto,
        qvector, evector, covvec, constrvec, misccovvec, miscconstrvec,
        baseconstrvec, basemiscconstrvec, initprobs,
        nstates, nintens, nintenseffs, nmisc, nmisceffs, nobs, npts, ncovs, ncoveffs,
        nmisccovs, nmisccoveffs, covmatch, death, tunit, exacttimes, fixedpars, plabs)

getobs.msm(sim, obstimes, death, tunit)

observed.msm(x, times)

msm.process.covs(covariates, data, constraint, nobs, nmatrix)

msm.form.output(matrix, nstates, nmatrix, nmatrixeffs, npars, ncovs,
                constrvec, baseconstrvec, fixedpars, fixed, covlabels,
                params, covmat, foundse, params.offset)

msm.check.qmatrix(qmatrix)

msm.check.ematrix(ematrix, qmatrix)

msm.check.consistency(qmatrix, misc, fromto=F, subject=NULL, state,
                      tostate=NULL, time, death=FALSE, exacttimes=FALSE, tunit=NULL)

msm.check.state(nstates, state, fromto=FALSE, tostate=NULL)

msm.check.model(state, subject, qmatrix, fromto=NULL, tostate=NULL)

msm.check.times(time, subject)

msm.check.tunit(fromto, time, subject, timelag, tunit)

qematrix.msm(x, covariates="mean", which="intens", sojourn)

qematrix.diagse.msm(x, covariates="mean", which="intens", sojourn, ni,
nieffs, ivector, nc, constrvec, baseconstrvec, covlabels, covmeans, trsum)

qematrix.diagse.formstr(nir, inds, cur.i, ni, nc, coefs, offset, trsum)

expsum(inds, coefs)

expitsum(inds, coefs)

qratio.se.msm(x, ind1, ind2, covariates="mean")

transient.msm(x)

absorbing.msm(x)

Author(s)

C. H. Jackson chris.jackson@imperial.ac.uk


[Package Contents]